IL_4V9D_117

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_117 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.2023

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V9D|1|BA|C|948
4V9D|1|BA|A|949
4V9D|1|BA|U|950
*
4V9D|1|BA|G|1231
4V9D|1|BA|U|1232
4V9D|1|BA|G|1233

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BI

30S ribosomal protein S9

Chain BM

30S ribosomal protein S13

Chain BV

Transfer RNA; tRNA