IL_4V9D_121

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUC*GAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_121 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1986

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9D|1|BA|U|1009
4V9D|1|BA|U|1010
4V9D|1|BA|C|1011
*
4V9D|1|BA|G|1018
4V9D|1|BA|A|1019
4V9D|1|BA|G|1020

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BN

30S ribosomal protein S14

Chain BS

30S ribosomal protein S19