IL_4V9D_134

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGACC*GCAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_134 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.3695

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V9D|1|BA|G|1258
4V9D|1|BA|C|1259
4V9D|1|BA|G|1260
4V9D|1|BA|A|1261
4V9D|1|BA|C|1262
4V9D|1|BA|C|1263
*
4V9D|1|BA|G|1272
4V9D|1|BA|C|1273
4V9D|1|BA|A|1274
4V9D|1|BA|A|1275
4V9D|1|BA|G|1276
4V9D|1|BA|C|1277

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BN

30S ribosomal protein S14