IL_4V9D_155

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_155 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.2152

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V9D|1|CA|C|281
4V9D|1|CA|A|282
4V9D|1|CA|G|283
*
4V9D|1|CA|C|357
4V9D|1|CA|U|358
4V9D|1|CA|G|359

Current chains

Chain CA

23S rRNA

Nearby chains