IL_4V9D_168

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_168 not in the Motif Atlas

Homologous match to IL_5J7L_266

Geometric discrepancy: 0.0889

The information below is about IL_5J7L_266

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V9D|1|CA|C|837
4V9D|1|CA|C|838
*
4V9D|1|CA|G|940
4V9D|1|CA|A|941
4V9D|1|CA|G|942

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein L35

Chain CL

50S ribosomal protein L15