IL_4V9D_169

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUU*AU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_169 not in the Motif Atlas

Homologous match to IL_5J7L_267

Geometric discrepancy: 0.1266

The information below is about IL_5J7L_267

Detailed Annotation

90 degree turn

Broad Annotation

90 degree turn

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

4V9D|1|CA|A|844
4V9D|1|CA|A|845
4V9D|1|CA|U|846
4V9D|1|CA|U|847
*
4V9D|1|CA|A|933
4V9D|1|CA|U|934

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CZ

50S ribosomal protein L30