IL_4V9D_174

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_174 not in the Motif Atlas

Homologous match to IL_5J7L_272

Geometric discrepancy: 0.0659

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V9D|1|CA|G|864
4V9D|1|CA|C|865
4V9D|1|CA|A|866
4V9D|1|CA|C|867
4V9D|1|CA|U|868
*
4V9D|1|CA|A|909
4V9D|1|CA|A|910
4V9D|1|CA|A|911
4V9D|1|CA|C|912

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CM

50S ribosomal protein L16