IL_4V9D_189

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V9D|1|CA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_189 not in the Motif Atlas

Homologous match to IL_5J7L_286

Geometric discrepancy: 0.0886

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

4V9D|1|CA|C|1196
4V9D|1|CA|G|1197
4V9D|1|CA|U|1198
*
4V9D|1|CA|A|1247
4V9D|1|CA|G|1248
4V9D|1|CA|U|1249
4V9D|1|CA|G|1250

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CL

50S ribosomal protein L15

Chain CQ

50S ribosomal protein L20