IL_4V9D_236

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

4V9D|1|CA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_236 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.3315

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4V9D|1|CA|G|2124
4V9D|1|CA|G|2125
4V9D|1|CA|A|2126
4V9D|1|CA|G|2127
4V9D|1|CA|G|2128
*
4V9D|1|CA|C|2160
4V9D|1|CA|C|2161
4V9D|1|CA|G|2162
4V9D|1|CA|A|2163
4V9D|1|CA|C|2164
4V9D|1|CA|C|2165
4V9D|1|CA|U|2166
4V9D|1|CA|U|2167
4V9D|1|CA|G|2168
4V9D|1|CA|A|2169
4V9D|1|CA|A|2170
4V9D|1|CA|A|2171
4V9D|1|CA|U|2172
4V9D|1|CA|A|2173
4V9D|1|CA|C|2174

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AV

Transfer RNA; tRNA