IL_4V9D_274

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGU*ACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUGU,ACAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_274 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.335

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V9D|1|DA|G|134
4V9D|1|DA|U|135
4V9D|1|DA|G|136
4V9D|1|DA|U|137
*
4V9D|1|DA|A|142
4V9D|1|DA|C|143
4V9D|1|DA|A|144
4V9D|1|DA|C|145

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23