IL_4V9D_288

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V9D|1|DA|G|801, 4V9D|1|DA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_288 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0694

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V9D|1|DA|G|674
4V9D|1|DA|A|675
4V9D|1|DA|A|676
4V9D|1|DA|A|677
4V9D|1|DA|C|678
*
4V9D|1|DA|G|799
4V9D|1|DA|A|800
4V9D|1|DA|G|801
4V9D|1|DA|A|802
4V9D|1|DA|U|803
4V9D|1|DA|A|804
4V9D|1|DA|G|805
4V9D|1|DA|C|806

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15