IL_4V9D_328

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGAAG*CUAAGC

Length

12 nucleotides

Bulged bases

4V9D|1|DA|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_328 not in the Motif Atlas

Geometric match to IL_9AXU_113

Geometric discrepancy: 0.2608

The information below is about IL_9AXU_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74322.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V9D|1|DA|G|1416
4V9D|1|DA|C|1417
4V9D|1|DA|G|1418
4V9D|1|DA|A|1419
4V9D|1|DA|A|1420
4V9D|1|DA|G|1421
*
4V9D|1|DA|C|1577
4V9D|1|DA|U|1578
4V9D|1|DA|A|1579
4V9D|1|DA|A|1580
4V9D|1|DA|G|1581
4V9D|1|DA|C|1582

Current chains

Chain DA

23S rRNA

Nearby chains