IL_4V9D_368

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCG*CGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCG,CGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_368 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.2112

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

4V9D|1|DA|C|2207
4V9D|1|DA|C|2208
4V9D|1|DA|G|2209
*
4V9D|1|DA|C|2215
4V9D|1|DA|G|2216
4V9D|1|DA|G|2217

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DX

50S ribosomal protein L28