IL_4V9D_400

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUGG*CUGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_400 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3552

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

4V9D|1|AA|C|1412
4V9D|1|AA|A|1413
4V9D|1|AA|U|1414
4V9D|1|AA|G|1415
4V9D|1|AA|G|1416
*
4V9D|1|AA|C|1484
4V9D|1|AA|U|1485
4V9D|1|AA|G|1486
4V9D|1|AA|G|1487
4V9D|1|AA|G|1488

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AY

ribosome recycling factor

Chain CA

Large subunit ribosomal RNA; LSU rRNA