IL_4V9D_446

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_446 not in the Motif Atlas

Homologous match to IL_5J7L_263

Geometric discrepancy: 0.0882

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4V9D|1|CA|U|703
4V9D|1|CA|G|704
4V9D|1|CA|A|705
4V9D|1|CA|A|706
4V9D|1|CA|G|707
*
4V9D|1|CA|U|724
4V9D|1|CA|G|725
4V9D|1|CA|G|726
4V9D|1|CA|A|727
4V9D|1|CA|G|728

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CC

50S ribosomal protein L2