IL_4V9D_450

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V9D|1|CA|G|2116, 4V9D|1|CA|A|2117, 4V9D|1|CA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_450 not in the Motif Atlas

Homologous match to IL_3U4M_002

Geometric discrepancy: 0.545

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V9D|1|CA|G|2110
4V9D|1|CA|U|2111
4V9D|1|CA|G|2112
4V9D|1|CA|U|2113
4V9D|1|CA|A|2114
4V9D|1|CA|G|2115
4V9D|1|CA|G|2116
4V9D|1|CA|A|2117
4V9D|1|CA|U|2118
4V9D|1|CA|A|2119
4V9D|1|CA|G|2120
*
4V9D|1|CA|C|2178
4V9D|1|CA|C|2179

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AV

Transfer RNA; tRNA