IL_4V9F_091

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUGAC*GGAAAAGAG

Length

14 nucleotides

Bulged bases

4V9F|1|0|A|2812, 4V9F|1|0|G|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V9F|1|0|C|2672
4V9F|1|0|U|2673
4V9F|1|0|G|2674
4V9F|1|0|A|2675
4V9F|1|0|C|2676
*
4V9F|1|0|G|2809
4V9F|1|0|G|2810
4V9F|1|0|A|2811
4V9F|1|0|A|2812
4V9F|1|0|A|2813
4V9F|1|0|A|2814
4V9F|1|0|G|2815
4V9F|1|0|A|2816
4V9F|1|0|G|2817

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L13P