IL_4V9F_109
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- UAAUCCUCUGAAG*CCAAAAUGAUCGGGA
- Length
- 28 nucleotides
- Bulged bases
- 4V9F|1|0|A|1123, 4V9F|1|0|A|1231, 4V9F|1|0|U|1234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_29826.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V9F|1|0|U|1122
4V9F|1|0|A|1123
4V9F|1|0|A|1124
4V9F|1|0|U|1125
4V9F|1|0|C|1126
4V9F|1|0|C|1127
4V9F|1|0|U|1128
4V9F|1|0|C|1129
4V9F|1|0|U|1130
4V9F|1|0|G|1131
4V9F|1|0|A|1132
4V9F|1|0|A|1133
4V9F|1|0|G|1134
*
4V9F|1|0|C|1228
4V9F|1|0|C|1229
4V9F|1|0|A|1230
4V9F|1|0|A|1231
4V9F|1|0|A|1232
4V9F|1|0|A|1233
4V9F|1|0|U|1234
4V9F|1|0|G|1235
4V9F|1|0|A|1236
4V9F|1|0|U|1237
4V9F|1|0|C|1238
4V9F|1|0|G|1239
4V9F|1|0|G|1240
4V9F|1|0|G|1241
4V9F|1|0|A|1242
Current chains
- Chain 0
- 23S Ribosomal RNA
Nearby chains
- Chain 9
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 50S ribosomal protein L3P
- Chain H
- 50S ribosomal protein L10e
- Chain J
- 50S ribosomal protein L13P
- Chain W
- 50S ribosomal protein L30P
Coloring options: