Motif IL_39721.1 Version IL_39721.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 1-25 | 2-24 | 3-23 | 6-7 | 13-14 | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_109 | 4V9F | 0.0000 | 3 | 0 | LSU rRNA | C | 1228 | C | 1229 | A | 1230 | A | 1232 | A | 1233 | G | 1235 | A | 1236 | U | 1237 | C | 1238 | G | 1239 | G | 1240 | G | 1241 | A | 1242 | * | U | 1122 | A | 1124 | U | 1125 | C | 1126 | C | 1127 | U | 1128 | C | 1129 | U | 1130 | G | 1131 | A | 1132 | A | 1133 | G | 1134 | cWW | tSH | tHH | cSH | cWW |
| 2 | IL_9E6Q_046 | 9E6Q | 0.7156 | 3 | 1 | LSU rRNA | C | 1250 | G | 1251 | A | 1252 | G | 1254 | A | 1255 | G | 1257 | U | 1258 | C | 1260 | A | 1261 | G | 1262 | G | 1263 | G | 1264 | A | 1265 | * | U | 1145 | C | 1146 | A | 1147 | A | 1148 | U | 1149 | C | 1150 | U | 1151 | A | 1152 | A | 1153 | A | 1154 | A | 1155 | G | 1156 | cWW | tSH | tHH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCAAAAUGAUCGGGA*UAAUCCUCUGAAG | 1 |
| CGAAGAUGUACAGGGA*UCAAUCUAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAAAUGAUCGGG*AAUCCUCUGAA | 1 |
| GAAGAUGUACAGGG*CAAUCUAAAA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW
- Heat map statistics
- Min 0.72 | Avg 0.36 | Max 0.72
Coloring options: