IL_4V9H_057

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9H_057 not in the Motif Atlas

Geometric match to IL_5Z1I_003

Geometric discrepancy: 0.2459

The information below is about IL_5Z1I_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9H|1|AA|C|1407
4V9H|1|AA|A|1408
4V9H|1|AA|C|1409
*
4V9H|1|AA|G|1491
4V9H|1|AA|A|1492
4V9H|1|AA|A|1493
4V9H|1|AA|G|1494

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AY

Elongation factor G

Chain BA

Large subunit ribosomal RNA; LSU rRNA