RNA 3D Hub //

Motif IL_31737.1 Version IL_31737.1 of this group appears in releases 3.91 to 3.91

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 51-53-4
1 IL_5Z1I_0025Z1I0.45352Decoding loop relatedARNA (21-mer)C7G8C9*G16||||8_555G19||||8_555cWWcWW
2 IL_5Z1I_0035Z1I0.45352Decoding loop relatedARNA (21-mer)C7||||8_555G8||||8_555C9||||8_555*G16G19cWWcWW
3 IL_8UO6_0028UO60.51572BHIV-1 Rev Response Element Stem-Loop II with tRNA scaffoldC41G42C43*G60G63cWWcWW
4 IL_3C3Z_0023C3Z0.51722Decoding loop relatedB+AHIV-1 subtype F genomic RNAC15A16C17*G7G10cWWcWW
5 IL_2O3X_0032O3X0.29342Decoding loop relatedB+ARNA (23-mer)C30A31C32*G16G19cWWcWW
6 IL_4M6D_0134M6D0.40851HaptamerG26A27G28*C39C41cWWcWW
7 IL_4M4O_0044M4O0.36231BRNA (59-MER)G26A27G28*C39C41cWWcWW
8 IL_7A0S_0447A0S0.23961Intercalated cWWX LSU rRNAG1241A1242G1243*U1232C1234cWWcWW
9 IL_2ET8_0012ET80.00001Stack and bulgeB+ARNA (22-mer)G41U42C43*G4C6cWWcWW
10 IL_2O3X_0012O3X0.13021Stack and bulgeB+ARNA (23-mer)G42U43C44*G5C7cWWcWW
11 IL_4WF9_0474WF90.30631Intercalated cWWX LSU rRNAG1266A1267C1268*G1257U1259cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGC*GAAG2
CAC*GAAG2
GAG*CAC2
GUC*GUC2
CGC*GACG1
GAG*UAC1
GAC*GAU1
Non-Watson-Crick part of the motif
SequenceCounts
A*A4
G*AA2
A*AA2
U*U2
G*AC1

Release history

Release3.91
Date2024-12-04
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Decoding loop related (4)
  • (3)
  • Stack and bulge (2)
  • Intercalated cWW (2)
    • Basepair signature
    cWW-L-cWW
    Heat map statistics
    Min 0.00 | Avg 0.38 | Max 0.71
    Help

    Coloring options:

    IL_5Z1I_002:IL_5Z1I_002 = 0IL_5Z1I_002:IL_5Z1I_003 = 0.0002IL_5Z1I_002:IL_8UO6_002 = 0.3473IL_5Z1I_002:IL_3C3Z_002 = 0.3516IL_5Z1I_002:IL_2O3X_003 = 0.4624IL_5Z1I_002:IL_4M6D_013 = 0.5779IL_5Z1I_002:IL_4M4O_004 = 0.5219IL_5Z1I_002:IL_7A0S_044 = 0.4512IL_5Z1I_002:IL_2ET8_001 = 0.4535IL_5Z1I_002:IL_2O3X_001 = 0.3896IL_5Z1I_002:IL_4WF9_047 = 0.5166IL_5Z1I_003:IL_5Z1I_002 = 0.0002IL_5Z1I_003:IL_5Z1I_003 = 0IL_5Z1I_003:IL_8UO6_002 = 0.3473IL_5Z1I_003:IL_3C3Z_002 = 0.3516IL_5Z1I_003:IL_2O3X_003 = 0.4624IL_5Z1I_003:IL_4M6D_013 = 0.5779IL_5Z1I_003:IL_4M4O_004 = 0.5219IL_5Z1I_003:IL_7A0S_044 = 0.4512IL_5Z1I_003:IL_2ET8_001 = 0.4535IL_5Z1I_003:IL_2O3X_001 = 0.3896IL_5Z1I_003:IL_4WF9_047 = 0.5166IL_8UO6_002:IL_5Z1I_002 = 0.3473IL_8UO6_002:IL_5Z1I_003 = 0.3473IL_8UO6_002:IL_8UO6_002 = 0IL_8UO6_002:IL_3C3Z_002 = 0.2534IL_8UO6_002:IL_2O3X_003 = 0.3987IL_8UO6_002:IL_4M6D_013 = 0.6206IL_8UO6_002:IL_4M4O_004 = 0.5702IL_8UO6_002:IL_7A0S_044 = 0.5382IL_8UO6_002:IL_2ET8_001 = 0.5157IL_8UO6_002:IL_2O3X_001 = 0.4986IL_8UO6_002:IL_4WF9_047 = 0.6628IL_3C3Z_002:IL_5Z1I_002 = 0.3516IL_3C3Z_002:IL_5Z1I_003 = 0.3516IL_3C3Z_002:IL_8UO6_002 = 0.2534IL_3C3Z_002:IL_3C3Z_002 = 0IL_3C3Z_002:IL_2O3X_003 = 0.3497IL_3C3Z_002:IL_4M6D_013 = 0.5113IL_3C3Z_002:IL_4M4O_004 = 0.4743IL_3C3Z_002:IL_7A0S_044 = 0.5421IL_3C3Z_002:IL_2ET8_001 = 0.5172IL_3C3Z_002:IL_2O3X_001 = 0.5192IL_3C3Z_002:IL_4WF9_047 = 0.706IL_2O3X_003:IL_5Z1I_002 = 0.4624IL_2O3X_003:IL_5Z1I_003 = 0.4624IL_2O3X_003:IL_8UO6_002 = 0.3987IL_2O3X_003:IL_3C3Z_002 = 0.3497IL_2O3X_003:IL_2O3X_003 = 0IL_2O3X_003:IL_4M6D_013 = 0.3224IL_2O3X_003:IL_4M4O_004 = 0.2746IL_2O3X_003:IL_7A0S_044 = 0.3115IL_2O3X_003:IL_2ET8_001 = 0.2934IL_2O3X_003:IL_2O3X_001 = 0.3501IL_2O3X_003:IL_4WF9_047 = 0.5337IL_4M6D_013:IL_5Z1I_002 = 0.5779IL_4M6D_013:IL_5Z1I_003 = 0.5779IL_4M6D_013:IL_8UO6_002 = 0.6206IL_4M6D_013:IL_3C3Z_002 = 0.5113IL_4M6D_013:IL_2O3X_003 = 0.3224IL_4M6D_013:IL_4M6D_013 = 0IL_4M6D_013:IL_4M4O_004 = 0.1178IL_4M6D_013:IL_7A0S_044 = 0.3993IL_4M6D_013:IL_2ET8_001 = 0.4085IL_4M6D_013:IL_2O3X_001 = 0.4768IL_4M6D_013:IL_4WF9_047 = 0.6381IL_4M4O_004:IL_5Z1I_002 = 0.5219IL_4M4O_004:IL_5Z1I_003 = 0.5219IL_4M4O_004:IL_8UO6_002 = 0.5702IL_4M4O_004:IL_3C3Z_002 = 0.4743IL_4M4O_004:IL_2O3X_003 = 0.2746IL_4M4O_004:IL_4M6D_013 = 0.1178IL_4M4O_004:IL_4M4O_004 = 0IL_4M4O_004:IL_7A0S_044 = 0.3365IL_4M4O_004:IL_2ET8_001 = 0.3623IL_4M4O_004:IL_2O3X_001 = 0.424IL_4M4O_004:IL_4WF9_047 = 0.5723IL_7A0S_044:IL_5Z1I_002 = 0.4512IL_7A0S_044:IL_5Z1I_003 = 0.4512IL_7A0S_044:IL_8UO6_002 = 0.5382IL_7A0S_044:IL_3C3Z_002 = 0.5421IL_7A0S_044:IL_2O3X_003 = 0.3115IL_7A0S_044:IL_4M6D_013 = 0.3993IL_7A0S_044:IL_4M4O_004 = 0.3365IL_7A0S_044:IL_7A0S_044 = 0IL_7A0S_044:IL_2ET8_001 = 0.2396IL_7A0S_044:IL_2O3X_001 = 0.2741IL_7A0S_044:IL_4WF9_047 = 0.3513IL_2ET8_001:IL_5Z1I_002 = 0.4535IL_2ET8_001:IL_5Z1I_003 = 0.4535IL_2ET8_001:IL_8UO6_002 = 0.5157IL_2ET8_001:IL_3C3Z_002 = 0.5172IL_2ET8_001:IL_2O3X_003 = 0.2934IL_2ET8_001:IL_4M6D_013 = 0.4085IL_2ET8_001:IL_4M4O_004 = 0.3623IL_2ET8_001:IL_7A0S_044 = 0.2396IL_2ET8_001:IL_2ET8_001 = 0IL_2ET8_001:IL_2O3X_001 = 0.1302IL_2ET8_001:IL_4WF9_047 = 0.3063IL_2O3X_001:IL_5Z1I_002 = 0.3896IL_2O3X_001:IL_5Z1I_003 = 0.3896IL_2O3X_001:IL_8UO6_002 = 0.4986IL_2O3X_001:IL_3C3Z_002 = 0.5192IL_2O3X_001:IL_2O3X_003 = 0.3501IL_2O3X_001:IL_4M6D_013 = 0.4768IL_2O3X_001:IL_4M4O_004 = 0.424IL_2O3X_001:IL_7A0S_044 = 0.2741IL_2O3X_001:IL_2ET8_001 = 0.1302IL_2O3X_001:IL_2O3X_001 = 0IL_2O3X_001:IL_4WF9_047 = 0.2527IL_4WF9_047:IL_5Z1I_002 = 0.5166IL_4WF9_047:IL_5Z1I_003 = 0.5166IL_4WF9_047:IL_8UO6_002 = 0.6628IL_4WF9_047:IL_3C3Z_002 = 0.706IL_4WF9_047:IL_2O3X_003 = 0.5337IL_4WF9_047:IL_4M6D_013 = 0.6381IL_4WF9_047:IL_4M4O_004 = 0.5723IL_4WF9_047:IL_7A0S_044 = 0.3513IL_4WF9_047:IL_2ET8_001 = 0.3063IL_4WF9_047:IL_2O3X_001 = 0.2527IL_4WF9_047:IL_4WF9_047 = 0IL_5Z1I_002IL_5Z1I_003IL_8UO6_002IL_3C3Z_002IL_2O3X_003IL_4M6D_013IL_4M4O_004IL_7A0S_044IL_2ET8_001IL_2O3X_001IL_4WF9_047Discrepancy0.000.100.200.300.400.500.600.70
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