IL_4V9H_143

3D structure

PDB id

4V9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state

Experimental method

X-RAY DIFFRACTION

Resolution

2.86 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V9H|1|BA|A|1938, 4V9H|1|BA|U|1944, 4V9H|1|BA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9H_143 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1215

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V9H|1|BA|C|1934
4V9H|1|BA|G|1935
4V9H|1|BA|A|1936
4V9H|1|BA|A|1937
4V9H|1|BA|A|1938
4V9H|1|BA|U|1939
4V9H|1|BA|U|1940
4V9H|1|BA|C|1941
4V9H|1|BA|C|1942
4V9H|1|BA|U|1943
4V9H|1|BA|U|1944
4V9H|1|BA|G|1945
*
4V9H|1|BA|C|1961
4V9H|1|BA|C|1962
4V9H|1|BA|U|1963
4V9H|1|BA|G|1964

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2