IL_4V9I_017

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*UGA

Length

5 nucleotides

Bulged bases

4V9I|1|AA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_017 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.1166

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

4V9I|1|AA|U|375
4V9I|1|AA|G|376
*
4V9I|1|AA|U|387
4V9I|1|AA|G|388
4V9I|1|AA|A|389

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S Ribosomal protein S16