IL_4V9I_018

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1539

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9I|1|AA|G|409
4V9I|1|AA|G|410
4V9I|1|AA|A|411
4V9I|1|AA|A|412
4V9I|1|AA|G|413
4V9I|1|AA|A|414
4V9I|1|AA|A|415
4V9I|1|AA|G|416
*
4V9I|1|AA|U|427
4V9I|1|AA|G|428
4V9I|1|AA|U|429
4V9I|1|AA|A|430
4V9I|1|AA|A|431
4V9I|1|AA|A|432
4V9I|1|AA|C|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S Ribosomal protein S4