IL_4V9I_042

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAGGGAACC*GGGUGCCCCGCGAGGGGAGCCCUA

Length

33 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|AA|U|1000
4V9I|1|AA|A|1001
4V9I|1|AA|G|1001|||A
4V9I|1|AA|G|1002
4V9I|1|AA|G|1003
4V9I|1|AA|A|1004
4V9I|1|AA|A|1005
4V9I|1|AA|C|1006
4V9I|1|AA|C|1007
*
4V9I|1|AA|G|1022
4V9I|1|AA|G|1023
4V9I|1|AA|G|1024
4V9I|1|AA|U|1025
4V9I|1|AA|G|1026
4V9I|1|AA|C|1027
4V9I|1|AA|C|1028
4V9I|1|AA|C|1029
4V9I|1|AA|C|1030
4V9I|1|AA|G|1030|||A
4V9I|1|AA|C|1030|||B
4V9I|1|AA|G|1030|||C
4V9I|1|AA|A|1030|||D
4V9I|1|AA|G|1031
4V9I|1|AA|G|1032
4V9I|1|AA|G|1033
4V9I|1|AA|G|1034
4V9I|1|AA|A|1035
4V9I|1|AA|G|1036
4V9I|1|AA|C|1037
4V9I|1|AA|C|1038
4V9I|1|AA|C|1039
4V9I|1|AA|U|1040
4V9I|1|AA|A|1041

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S Ribosomal protein S3