IL_4V9I_044

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

4V9I|1|AA|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_044 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.0973

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

4V9I|1|AA|U|1052
4V9I|1|AA|G|1053
4V9I|1|AA|C|1054
4V9I|1|AA|A|1055
4V9I|1|AA|U|1056
*
4V9I|1|AA|A|1204
4V9I|1|AA|U|1205
4V9I|1|AA|G|1206

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S Ribosomal protein S3

Chain AJ

30S Ribosomal protein S10

Chain AN

30S Ribosomal protein S14

Chain AY

A-SITE tRNA