IL_4V9I_056

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_056 not in the Motif Atlas

Geometric match to IL_3TD0_001

Geometric discrepancy: 0.1576

The information below is about IL_3TD0_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

4V9I|1|AA|G|1405
4V9I|1|AA|U|1406
4V9I|1|AA|C|1407
*
4V9I|1|AA|G|1494
4V9I|1|AA|U|1495
4V9I|1|AA|C|1496

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S Ribosomal protein S13

Chain AX

mRNA

Chain AY

A-SITE tRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA