IL_4V9I_081
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V9I|1|BA|G|847, 4V9I|1|BA|G|851
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_081 not in the Motif Atlas
- Homologous match to IL_4WF9_021
- Geometric discrepancy: 0.0738
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V9I|1|BA|G|720
4V9I|1|BA|A|721
4V9I|1|BA|A|722
4V9I|1|BA|A|723
4V9I|1|BA|C|724
*
4V9I|1|BA|G|845
4V9I|1|BA|A|846
4V9I|1|BA|G|847
4V9I|1|BA|A|848
4V9I|1|BA|U|849
4V9I|1|BA|A|850
4V9I|1|BA|G|851
4V9I|1|BA|C|852
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BF
- 50S ribosomal protein L4
- Chain BP
- 50S ribosomal protein L15
Coloring options: