IL_4V9I_105

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V9I|1|BA|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_105 not in the Motif Atlas

Homologous match to IL_7RQB_041

Geometric discrepancy: 0.0837

The information below is about IL_7RQB_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_43275.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V9I|1|BA|G|1076
4V9I|1|BA|A|1077
4V9I|1|BA|U|1078
4V9I|1|BA|G|1079
*
4V9I|1|BA|C|1166
4V9I|1|BA|G|1167
4V9I|1|BA|C|1168

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BQ

50S ribosomal protein L16