IL_4V9I_130

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

4V9I|1|BA|G|1831, 4V9I|1|BA|G|1846, 4V9I|1|BA|U|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_130 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.056

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V9I|1|BA|U|1828
4V9I|1|BA|G|1829
4V9I|1|BA|C|1830
4V9I|1|BA|G|1831
4V9I|1|BA|A|1832
4V9I|1|BA|A|1833
4V9I|1|BA|C|1834
*
4V9I|1|BA|G|1843
4V9I|1|BA|G|1844
4V9I|1|BA|A|1845
4V9I|1|BA|G|1846
4V9I|1|BA|G|1847
4V9I|1|BA|U|1848
4V9I|1|BA|A|1849
4V9I|1|BA|U|1850
4V9I|1|BA|A|1851

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2