IL_4V9I_139
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- ACGA*UCUAU
- Length
- 9 nucleotides
- Bulged bases
- 4V9I|1|BA|C|2076, 4V9I|1|BA|C|2623, 4V9I|1|BA|U|2624
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_139 not in the Motif Atlas
- Homologous match to IL_9DFE_079
- Geometric discrepancy: 0.0897
- The information below is about IL_9DFE_079
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_70335.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V9I|1|BA|A|2075
4V9I|1|BA|C|2076
4V9I|1|BA|G|2077
4V9I|1|BA|A|2078
*
4V9I|1|BA|U|2622
4V9I|1|BA|C|2623
4V9I|1|BA|U|2624
4V9I|1|BA|A|2625
4V9I|1|BA|U|2626
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
- Chain BW
- 50S ribosomal protein L22
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