IL_4V9I_157
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_157 not in the Motif Atlas
- Geometric match to IL_7RQB_094
- Geometric discrepancy: 0.0964
- The information below is about IL_7RQB_094
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_92788.2
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 14
Unit IDs
4V9I|1|BA|A|2470
4V9I|1|BA|U|2471
4V9I|1|BA|C|2472
*
4V9I|1|BA|G|2500
4V9I|1|BA|G|2501
4V9I|1|BA|U|2502
4V9I|1|BA|U|2503
4V9I|1|BA|U|2504
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain AY
- A-SITE tRNA
- Chain B0
- 50S ribosomal protein L27
- Chain BQ
- 50S ribosomal protein L16
Coloring options: