IL_4V9I_160
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUC*GCGAG
- Length
- 8 nucleotides
- Bulged bases
- 4V9I|1|BA|G|2587, 4V9I|1|BA|A|2588
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_160 not in the Motif Atlas
- Homologous match to IL_7RQB_097
- Geometric discrepancy: 0.0745
- The information below is about IL_7RQB_097
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_90933.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
4V9I|1|BA|C|2521
4V9I|1|BA|U|2522
4V9I|1|BA|C|2523
*
4V9I|1|BA|G|2585
4V9I|1|BA|C|2586
4V9I|1|BA|G|2587
4V9I|1|BA|A|2588
4V9I|1|BA|G|2589
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain B5
- 50S ribosomal protein L32
- Chain BE
- 50S ribosomal protein L3
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