IL_4V9I_160

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4V9I|1|BA|G|2587, 4V9I|1|BA|A|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_160 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0745

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4V9I|1|BA|C|2521
4V9I|1|BA|U|2522
4V9I|1|BA|C|2523
*
4V9I|1|BA|G|2585
4V9I|1|BA|C|2586
4V9I|1|BA|G|2587
4V9I|1|BA|A|2588
4V9I|1|BA|G|2589

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3