IL_4V9I_161

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

4V9I|1|BA|A|2583, 4V9I|1|BA|C|2584

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_161 not in the Motif Atlas

Geometric match to IL_7RQB_098

Geometric discrepancy: 0.0761

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V9I|1|BA|C|2523
4V9I|1|BA|G|2524
*
4V9I|1|BA|C|2582
4V9I|1|BA|A|2583
4V9I|1|BA|C|2584
4V9I|1|BA|G|2585

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AY

A-SITE tRNA

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13