IL_4V9I_163

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V9I|1|BA|A|2613

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_163 not in the Motif Atlas

Homologous match to IL_7RQB_101

Geometric discrepancy: 0.2592

The information below is about IL_7RQB_101

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

4V9I|1|BA|C|2602
4V9I|1|BA|G|2603
*
4V9I|1|BA|C|2612
4V9I|1|BA|A|2613
4V9I|1|BA|G|2614

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AY

A-SITE tRNA

Chain B0

50S ribosomal protein L27

Chain BD

50S ribosomal protein L2