IL_4V9I_171

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGG*CCGAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_171 not in the Motif Atlas

Homologous match to IL_7RQB_109

Geometric discrepancy: 0.096

The information below is about IL_7RQB_109

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58764.3

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9I|1|BA|G|2852
4V9I|1|BA|G|2853
4V9I|1|BA|G|2854
4V9I|1|BA|G|2855
*
4V9I|1|BA|C|2879
4V9I|1|BA|C|2880
4V9I|1|BA|G|2881
4V9I|1|BA|A|2882
4V9I|1|BA|C|2883

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19