IL_4V9I_184

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUG*CG

Length

6 nucleotides

Bulged bases

4V9I|1|CA|G|65, 4V9I|1|CA|U|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_184 not in the Motif Atlas

Homologous match to IL_6CZR_117

Geometric discrepancy: 0.1239

The information below is about IL_6CZR_117

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.3

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V9I|1|CA|C|64
4V9I|1|CA|G|65
4V9I|1|CA|U|66
4V9I|1|CA|G|67
*
4V9I|1|CA|C|97
4V9I|1|CA|G|98

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S Ribosomal protein S20