3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UG*UGA
Length
5 nucleotides
Bulged bases
4V9I|1|CA|G|384
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9I_196 not in the Motif Atlas
Geometric match to IL_5J7L_019
Geometric discrepancy: 0.0936
The information below is about IL_5J7L_019
Detailed Annotation
Single bulged G
Broad Annotation
No text annotation
Motif group
IL_00225.14
Basepair signature
cWW-L-cWW
Number of instances in this motif group
50

Unit IDs

4V9I|1|CA|U|371
4V9I|1|CA|G|372
*
4V9I|1|CA|U|383
4V9I|1|CA|G|384
4V9I|1|CA|A|385

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CP
30S Ribosomal protein S16

Coloring options:


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