IL_4V9I_197
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAAGAAG*UGUAAAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_197 not in the Motif Atlas
- Homologous match to IL_4LFB_017
- Geometric discrepancy: 0.1357
- The information below is about IL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62329.1
- Basepair signature
- cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V9I|1|CA|G|405
4V9I|1|CA|G|406
4V9I|1|CA|A|407
4V9I|1|CA|A|408
4V9I|1|CA|G|409
4V9I|1|CA|A|410
4V9I|1|CA|A|411
4V9I|1|CA|G|412
*
4V9I|1|CA|U|423
4V9I|1|CA|G|424
4V9I|1|CA|U|425
4V9I|1|CA|A|426
4V9I|1|CA|A|427
4V9I|1|CA|A|428
4V9I|1|CA|C|429
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CD
- 30S Ribosomal protein S4
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