3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9I_197 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1357
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62329.1
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

4V9I|1|CA|G|405
4V9I|1|CA|G|406
4V9I|1|CA|A|407
4V9I|1|CA|A|408
4V9I|1|CA|G|409
4V9I|1|CA|A|410
4V9I|1|CA|A|411
4V9I|1|CA|G|412
*
4V9I|1|CA|U|423
4V9I|1|CA|G|424
4V9I|1|CA|U|425
4V9I|1|CA|A|426
4V9I|1|CA|A|427
4V9I|1|CA|A|428
4V9I|1|CA|C|429

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CD
30S Ribosomal protein S4

Coloring options:


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