IL_4V9I_198

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_198 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1045

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V9I|1|CA|G|441
4V9I|1|CA|G|442
4V9I|1|CA|A|443
4V9I|1|CA|C|444
4V9I|1|CA|G|445
*
4V9I|1|CA|C|468
4V9I|1|CA|G|469
4V9I|1|CA|G|470
4V9I|1|CA|U|471
4V9I|1|CA|A|472
4V9I|1|CA|C|473

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L9

Chain CD

30S Ribosomal protein S4

Chain CP

30S Ribosomal protein S16