IL_4V9I_215

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

4V9I|1|CA|A|1377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_215 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1078

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

4V9I|1|CA|G|900
4V9I|1|CA|A|901
*
4V9I|1|CA|U|1376
4V9I|1|CA|A|1377
4V9I|1|CA|C|1378

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CE

30S Ribosomal protein S5