IL_4V9I_231

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUGCCAC*GGAGCUAAUC

Length

18 nucleotides

Bulged bases

4V9I|1|CA|U|1239, 4V9I|1|CA|A|1262, 4V9I|1|CA|U|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9I|1|CA|G|1237
4V9I|1|CA|A|1238
4V9I|1|CA|U|1239
4V9I|1|CA|G|1240
4V9I|1|CA|C|1241
4V9I|1|CA|C|1242
4V9I|1|CA|A|1243
4V9I|1|CA|C|1244
*
4V9I|1|CA|G|1255
4V9I|1|CA|G|1256
4V9I|1|CA|A|1257
4V9I|1|CA|G|1258
4V9I|1|CA|C|1259
4V9I|1|CA|U|1260
4V9I|1|CA|A|1261
4V9I|1|CA|A|1262
4V9I|1|CA|U|1263
4V9I|1|CA|C|1264

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal protein S3

Chain CJ

30S Ribosomal protein S10

Chain CN

30S Ribosomal protein S14

Chain CU

30S Ribosomal protein THX