IL_4V9I_238

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_238 not in the Motif Atlas

Homologous match to IL_5J7L_062

Geometric discrepancy: 0.0802

The information below is about IL_5J7L_062

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V9I|1|CA|G|1399
4V9I|1|CA|G|1400
4V9I|1|CA|A|1401
4V9I|1|CA|G|1402
*
4V9I|1|CA|U|1459
4V9I|1|CA|G|1460
4V9I|1|CA|A|1461
4V9I|1|CA|C|1462

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA