IL_4V9I_247

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*CGUGGAUC

Length

13 nucleotides

Bulged bases

4V9I|1|DA|G|98

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_247 not in the Motif Atlas

Homologous match to IL_7RQB_004

Geometric discrepancy: 0.0822

The information below is about IL_7RQB_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.2

Basepair signature

cWW-tSS-L-tSH-L-R-R-cWW-L

Number of instances in this motif group

18

Unit IDs

4V9I|1|DA|G|79
4V9I|1|DA|G|80
4V9I|1|DA|G|81
4V9I|1|DA|A|82
4V9I|1|DA|G|83
*
4V9I|1|DA|C|95
4V9I|1|DA|G|96
4V9I|1|DA|U|97
4V9I|1|DA|G|98
4V9I|1|DA|G|99
4V9I|1|DA|A|100
4V9I|1|DA|U|101
4V9I|1|DA|C|102

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D2

50S ribosomal protein L29

Chain DY

50S ribosomal protein L24