IL_4V9I_249
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_249 not in the Motif Atlas
- Homologous match to IL_7RQB_006
- Geometric discrepancy: 0.0604
- The information below is about IL_7RQB_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V9I|1|DA|G|176
4V9I|1|DA|G|177
4V9I|1|DA|A|178
4V9I|1|DA|A|179
4V9I|1|DA|C|180
4V9I|1|DA|U|181
4V9I|1|DA|G|182
*
4V9I|1|DA|C|189
4V9I|1|DA|U|190
4V9I|1|DA|C|191
4V9I|1|DA|A|192
4V9I|1|DA|G|193
4V9I|1|DA|U|194
4V9I|1|DA|A|195
4V9I|1|DA|C|196
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L28
- Chain D7
- 50S ribosomal protein L34
- Chain D8
- 50S ribosomal protein L35
- Chain DP
- 50S ribosomal protein L15
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