IL_4V9I_250

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_250 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.062

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V9I|1|DA|U|227
4V9I|1|DA|G|228
4V9I|1|DA|A|229
4V9I|1|DA|G|230
4V9I|1|DA|U|231
4V9I|1|DA|A|232
4V9I|1|DA|G|233
*
4V9I|1|DA|C|241
4V9I|1|DA|G|242
4V9I|1|DA|A|243
4V9I|1|DA|A|244
4V9I|1|DA|A|245
4V9I|1|DA|G|246

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D8

50S ribosomal protein L35

Chain DP

50S ribosomal protein L15