IL_4V9I_261

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

4V9I|1|DA|G|847, 4V9I|1|DA|G|851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_261 not in the Motif Atlas

Homologous match to IL_4WF9_021

Geometric discrepancy: 0.1084

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

4V9I|1|DA|G|720
4V9I|1|DA|A|721
4V9I|1|DA|A|722
4V9I|1|DA|A|723
4V9I|1|DA|C|724
*
4V9I|1|DA|G|845
4V9I|1|DA|A|846
4V9I|1|DA|G|847
4V9I|1|DA|A|848
4V9I|1|DA|U|849
4V9I|1|DA|A|850
4V9I|1|DA|G|851
4V9I|1|DA|C|852

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15