IL_4V9I_281
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CCCCCAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_281 not in the Motif Atlas
- Homologous match to IL_7RQB_037
- Geometric discrepancy: 0.0844
- The information below is about IL_7RQB_037
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_15861.7
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
4V9I|1|DA|C|1049
4V9I|1|DA|C|1050
4V9I|1|DA|C|1051
4V9I|1|DA|C|1052
4V9I|1|DA|C|1053
4V9I|1|DA|A|1054
4V9I|1|DA|A|1055
4V9I|1|DA|G|1056
*
4V9I|1|DA|C|1195
4V9I|1|DA|G|1196
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DN
- 50S ribosomal protein L13
- Chain DU
- 50S ribosomal protein L20
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