IL_4V9I_283

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4V9I|1|DA|U|1186, 4V9I|1|DA|A|1188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_283 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.0979

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V9I|1|DA|C|1063
4V9I|1|DA|U|1064
4V9I|1|DA|A|1065
4V9I|1|DA|A|1066
4V9I|1|DA|G|1067
4V9I|1|DA|U|1068
4V9I|1|DA|G|1069
*
4V9I|1|DA|C|1184
4V9I|1|DA|U|1185
4V9I|1|DA|U|1186
4V9I|1|DA|A|1187
4V9I|1|DA|A|1188
4V9I|1|DA|G|1189

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6

Chain DN

50S ribosomal protein L13