IL_4V9I_286

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

4V9I|1|DA|G|1293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_286 not in the Motif Atlas

Homologous match to IL_7RQB_045

Geometric discrepancy: 0.0716

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V9I|1|DA|C|1240
4V9I|1|DA|G|1241
4V9I|1|DA|U|1242
*
4V9I|1|DA|A|1292
4V9I|1|DA|G|1293
4V9I|1|DA|U|1294
4V9I|1|DA|G|1295

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15

Chain DU

50S ribosomal protein L20